//localhost:4321/key-objective-2/agatashakira-the-aop-project-part-4/index.html The AOP project ► Key objective 2 Author: Shakira Agata This Jupyter Notebook describes the steps needed for the mapping of transcriptomics datasets: GSE109565, E-MEXP-2599 and E-MEXP-3583 in the enriched AOP network. This notebook is subdivided into the following seven sections: Section 1: System preparation Section 2: Retrieval of molecular inflammation-process related AOP network Section 3: Adaptation of gene node color of molecular inflammation-process related AOP network Section 4: Mapping of dataset:GSE109565 Section 4.1 PCB126 concentration 1 Section 4.2 PCB126 concentration 2 Section 4.3 PCB126 concentration 3 Section 4.4 Roundup Section 5: Mapping of dataset:E-MEXP-2599 Section 5.1 CdCl2 exposure time 1 Section 5.2 CdCl2 exposure time 2 Section 5.3 CsA exposure time 1 Section 5.4 CsA exposure time 2 Section 5.5 Diquat dibromide exposure time 1 Section 5.6 Diquat dibromide exposure time 2 Section 6: Mapping of dataset:E-MEXP-3583 Section 6.1 Ag+ exposure time 1 Section 6.2 Ag+ exposure time 2 Section 6.3 AgNP exposure time 1 Section 6.4 AgNP exposure time 2 Section 7: Metadata Section 1: System preparation In this section, you will import the required packages and tools you need for this Jupyternotebook. Hugo en